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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA binding
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
30
August, 2017
23
May, 2020
13
December, 2017
5
August, 2021
3
November, 2018
Available data
95
bam
72
fastq
44
tagAlign
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
Organism
123
Homo sapiens
Biosample type
65
tissue
56
cell line
1
in vitro differentiated cells
1
primary cell
Organ
123
liver
95
brain
77
connective tissue
60
heart
55
pancreas
54
adipose tissue
28
epithelium
23
blood vessel
23
vasculature
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
5
vein
gonad
4
ovary
3
eye
1
lymph node
Project
123
AMP
Genome assembly (visualization)
hg19
360
GRCh38
Lab
119
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
1
missing controlled_by
organ_slims!
gonad
assembly!
hg19
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
tissue
liver
62
right lobe of liver
3
cell line
HepG2
56
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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