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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
131
total RNA-seq
104
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
8
snATAC-seq
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
189
DNA binding
Target of assay
94
histone
94
histone modification
60
transcription factor
50
narrow histone mark
44
broad histone mark
33
control
18
RNA binding protein
11
chromatin remodeller
Date released
27
December, 2018
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
18
January, 2019
15
November, 2018
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
189
bam
155
bigWig
151
bed narrowPeak
132
fastq
90
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
189
Homo sapiens
Biosample type
92
primary cell
75
cell line
22
in vitro differentiated cells
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
187
AMP
2
T1D
Genome assembly (visualization)
155
hg19
151
GRCh38
Lab
189
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
cell line
GM12878
60
EndoC_BH1
15
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
See all biosamples
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