Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
651
ChIP-seq
250
total RNA-seq
69
ATAC-seq
15
DNase-seq
8
Hi-C
7
WGBS
7
single cell RNA-seq
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
651
DNA binding
Target of assay
346
transcription factor
173
histone modification
172
histone
129
control
87
broad histone mark
85
narrow histone mark
82
recombinant protein
62
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
318
November, 2017
63
December, 2017
50
May, 2019
50
May, 2020
49
November, 2018
48
August, 2017
45
October, 2019
22
August, 2021
6
February, 2021
Available data
609
bam
508
bigWig
486
bed narrowPeak
455
fastq
421
bigBed narrowPeak
92
tagAlign
62
bed broadPeak
62
bigBed broadPeak
6
bed bed3+
3
tar
Organism
651
Homo sapiens
Biosample type
384
cell line
228
tissue
24
primary cell
15
in vitro differentiated cells
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
651
AMP
Genome assembly (visualization)
505
hg19
433
GRCh38
Lab
633
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
651 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
378
smooth muscle cell of the coronary artery
6
tissue
liver
145
tibial artery
23
ascending aorta
16
thoracic aorta
16
aorta
13
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
hepatocyte
4
brain microvascular endothelial cell
3
in vitro differentiated cells
hepatocyte
15
See all biosamples
Download