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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
total RNA-seq
107
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
107
DNA binding
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
23
control
6
RNA binding protein
6
transcription factor
Date released
26
August, 2017
24
October, 2019
21
September, 2018
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
1
March, 2020
1
May, 2021
Available data
107
bam
83
bigWig
79
bed narrowPeak
53
fastq
22
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
tagAlign
3
bed bed3+
Organism
107
Homo sapiens
Biosample type
92
primary cell
in vitro differentiated cells
15
cell line
Organ
537
liver
218
brain
215
pancreas
134
heart
107
epithelium
102
vasculature
99
blood vessel
86
connective tissue
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
embryo
Project
105
AMP
2
T1D
Genome assembly (visualization)
83
hg19
79
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
cell line
EndoC_BH1
15
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