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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
52
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
52
DNA binding
1
DNA accessibility
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
23
April, 2019
21
October, 2019
5
May, 2019
3
June, 2019
1
July, 2019
Available data
53
bam
40
bed narrowPeak
40
bigWig
25
bigBed narrowPeak
Organism
53
Homo sapiens
Biosample type
28
tissue
15
primary cell
10
cell line
Organ
552
liver
220
pancreas
219
brain
153
connective tissue
130
epithelium
103
vasculature
100
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
53
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
18
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
53
AMP
Genome assembly (visualization)
40
hg19
39
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ChIP-seq
FAIRE-seq
tissue
kidney
27
1
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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