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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
28
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
small RNA-seq
Assay category
28
DNA binding
Target of assay
12
control
8
histone
8
histone modification
8
transcription factor
7
recombinant protein
5
narrow histone mark
3
broad histone mark
1
RNA binding protein
Date released
21
October, 2019
5
April, 2019
1
June, 2019
1
May, 2019
Available data
52
bam
39
bed narrowPeak
39
bigWig
bigBed narrowPeak
Organism
28
Homo sapiens
Biosample type
10
cell line
9
primary cell
9
tissue
Organ
200
liver
159
pancreas
138
connective tissue
124
brain
93
epithelium
67
adipose tissue
31
vasculature
30
blood vessel
30
heart
28
kidney
25
musculature of body
22
embryo
18
limb
13
artery
11
nerve
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
28
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
Lab
28
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
primary cell
epithelial cell of proximal tubule
8
kidney epithelial cell
1
tissue
kidney
9
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