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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
DNase-seq
91
ChIP-seq
76
ATAC-seq
66
total RNA-seq
65
single cell RNA-seq
9
RRBS
7
Hi-C
7
snATAC-seq
3
pCHi-C
3
small RNA-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
WGBS
Assay category
91
DNA binding
Target of assay
63
histone
63
histone modification
35
broad histone mark
28
narrow histone mark
18
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
23
April, 2019
22
August, 2017
21
October, 2019
13
June, 2019
12
May, 2019
Available data
69
bam
66
bed narrowPeak
66
bigWig
38
bigBed narrowPeak
15
tagAlign
13
bed broadPeak
Organism
91
Homo sapiens
Biosample type
56
tissue
25
primary cell
10
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
91
AMP
Genome assembly (visualization)
66
hg19
52
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
tissue
kidney
27
skeletal muscle tissue
22
muscle of leg
7
primary cell
epithelial cell of proximal tubule
10
skeletal muscle satellite cell
8
kidney epithelial cell
5
skeletal muscle cell
2
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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