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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
539
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
539
DNA binding
Target of assay
326
transcription factor
108
control
102
histone modification
101
histone
81
recombinant protein
59
narrow histone mark
56
RNA binding protein
42
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
305
November, 2017
63
December, 2017
50
May, 2020
48
August, 2017
46
November, 2018
22
August, 2021
5
October, 2019
Available data
497
bam
439
fastq
420
bigWig
401
bed narrowPeak
340
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
539
Homo sapiens
Biosample type
365
cell line
155
tissue
15
in vitro differentiated cells
4
primary cell
Organ
539
liver
214
brain
164
pancreas
136
connective tissue
108
epithelium
102
vasculature
99
blood vessel
94
heart
66
limb
61
adipose tissue
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
21
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
539
AMP
Genome assembly (visualization)
417
hg19
355
GRCh38
Lab
521
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
539 results
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Clear Filters
ChIP-seq
cell line
HepG2
365
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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