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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
237
DNA binding
Target of assay
97
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
Available data
196
bam
164
bed narrowPeak
164
bigWig
137
fastq
103
bigBed narrowPeak
74
tagAlign
6
bed bed3+
Organism
237
Homo sapiens
Biosample type
155
tissue
63
cell line
15
in vitro differentiated cells
4
primary cell
Organ
237
liver
218
pancreas
153
connective tissue
127
brain
123
epithelium
96
blood vessel
96
vasculature
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
237
AMP
Genome assembly (visualization)
163
hg19
143
GRCh38
Lab
219
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
237 results
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Clear Filters
ChIP-seq
tissue
liver
145
right lobe of liver
10
cell line
HepG2
63
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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