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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
83
DNase-seq
76
ATAC-seq
65
total RNA-seq
64
single cell RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
87
DNA binding
Target of assay
54
histone
54
histone modification
31
broad histone mark
23
control
23
narrow histone mark
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
56
October, 2019
23
April, 2019
5
May, 2019
3
June, 2019
Available data
87
bam
63
bed narrowPeak
63
bigWig
48
bigBed narrowPeak
Organism
87
Homo sapiens
Biosample type
62
tissue
15
primary cell
10
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
87
AMP
Genome assembly (visualization)
63
GRCh38
63
hg19
Lab
87
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
87 results
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Clear Filters
ChIP-seq
tissue
tibial nerve
35
kidney
27
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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