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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
total RNA-seq
177
ChIP-seq
138
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
177
DNA binding
Target of assay
119
histone
119
histone modification
61
broad histone mark
58
narrow histone mark
48
control
19
transcription factor
RNA binding protein
Date released
92
August, 2017
45
October, 2018
September, 2018
13
October, 2019
12
November, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
157
bam
120
bigWig
107
fastq
100
bed narrowPeak
53
bigBed narrowPeak
19
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
170
Homo sapiens
Biosample type
109
tissue
38
primary cell
27
cell line
3
in vitro differentiated cells
Organ
494
liver
215
brain
177
pancreas
143
connective tissue
123
heart
100
epithelium
97
vasculature
95
blood vessel
68
adipose tissue
66
limb
50
blood
50
bodily fluid
49
kidney
39
musculature of body
35
nerve
33
artery
22
embryo
20
spleen
17
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
173
AMP
4
T1D
Genome assembly (visualization)
122
hg19
116
GRCh38
Lab
177
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
month_released!
September, 2018
BIOSAMPLE
ASSAY
177 results
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ChIP-seq
tissue
islet of Langerhans
48
body of pancreas
30
endocrine pancreas
16
pancreas
15
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
cell line
EndoC_BH1
14
Panc1
13
in vitro differentiated cells
pancreatic PP cell
3
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