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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
159
DNA binding
Target of assay
107
control
52
transcription factor
33
histone
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
96
November, 2017
23
May, 2020
16
August, 2021
13
December, 2017
10
August, 2017
1
November, 2018
Available data
140
bam
117
fastq
60
bigWig
43
bed narrowPeak
32
bigBed narrowPeak
28
tagAlign
12
bed broadPeak
12
bigBed broadPeak
3
tar
Organism
159
Homo sapiens
Biosample type
112
cell line
45
tissue
1
in vitro differentiated cells
1
primary cell
Organ
159
liver
46
pancreas
34
connective tissue
28
brain
27
epithelium
24
adipose tissue
22
vasculature
21
blood vessel
20
heart
17
limb
13
kidney
11
nerve
9
artery
8
spleen
6
blood
6
bodily fluid
6
embryo
6
musculature of body
2
vein
1
eye
Project
159
AMP
Genome assembly (visualization)
346
hg19
GRCh38
Lab
144
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
histone modification
assembly!
GRCh38
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ChIP-seq
cell line
HepG2
112
tissue
liver
42
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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