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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
42
DNA binding
Target of assay
237
histone
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
15
August, 2017
12
June, 2019
6
November, 2017
3
May, 2021
3
October, 2019
2
May, 2019
1
August, 2021
Available data
39
bam
21
fastq
17
bigWig
10
bed narrowPeak
10
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
tagAlign
Organism
42
Homo sapiens
Biosample type
446
cell line
279
tissue
86
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
26
epithelium
12
pancreas
6
brain
6
vasculature
5
kidney
4
blood vessel
4
connective tissue
3
heart
2
eye
2
musculature of body
2
vein
1
liver
Project
42
AMP
Genome assembly (visualization)
17
hg19
9
GRCh38
Lab
39
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
3
epithelial cell of proximal tubule
3
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