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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
32
DNA binding
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
368
November, 2017
208
August, 2017
101
May, 2021
101
October, 2019
86
May, 2019
78
December, 2017
70
November, 2018
63
October, 2018
57
April, 2019
34
December, 2018
32
August, 2021
23
May, 2020
22
January, 2019
20
June, 2019
17
September, 2018
16
February, 2018
13
October, 2017
9
November, 2019
8
February, 2021
6
September, 2017
Available data
19
bed narrowPeak
19
bigWig
15
bam
15
tagAlign
1
bed bed3+
Organism
32
Homo sapiens
Biosample type
16
cell line
14
in vitro differentiated cells
2
primary cell
Organ
18
liver
2
epithelium
Project
32
AMP
Genome assembly (visualization)
18
hg19
7
GRCh38
Lab
16
AMP-T2D consortium
16
Bing Ren, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
16
in vitro differentiated cells
neural progenitor cell
14
primary cell
hepatocyte
2
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