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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1753
ChIP-seq
1460
total RNA-seq
448
ATAC-seq
305
single cell RNA-seq
95
DNase-seq
85
RNA microarray
78
snATAC-seq
74
WGBS
55
pCHi-C
29
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
95
DNA accessibility
1
DNA methylation
Date released
77
June, 2019
9
November, 2018
5
August, 2017
3
October, 2019
1
May, 2021
1
November, 2020
Available data
94
bam
94
bed narrowPeak
94
bigBed narrowPeak
94
bigWig
92
bed broadPeak
92
bigBed broadPeak
90
bed bed3+
12
fastq
Organism
96
Homo sapiens
Biosample type
74
tissue
20
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
96
AMP
Genome assembly (visualization)
92
GRCh38
78
hg19
Lab
96
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
limb
kidney
BIOSAMPLE
ASSAY
96 results
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Clear Filters
DNase-seq
DNAme array
tissue
heart
18
brain
14
body of pancreas
4
heart left ventricle
3
retina
3
+ See 25 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 11 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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