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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
212
DNA accessibility
21
DNA methylation
Date released
187
June, 2019
15
July, 2019
11
August, 2017
10
October, 2019
9
November, 2018
1
November, 2020
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
16
fastq
Organism
233
Homo sapiens
Biosample type
189
tissue
41
primary cell
2
cell line
1
in vitro differentiated cells
Organ
85
kidney
38
musculature of body
36
limb
34
brain
32
heart
25
epithelium
18
ureter
12
vasculature
10
connective tissue
10
pancreas
9
blood vessel
8
liver
5
eye
4
artery
2
adipose tissue
2
nerve
2
vein
1
pericardium
1
spleen
Project
233
AMP
Genome assembly (visualization)
207
GRCh38
205
hg19
Lab
233
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
233 results
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Clear Filters
DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
+ See 42 more…
primary cell
cardiac fibroblast
3
1
kidney tubule cell
3
skeletal muscle myoblast
2
1
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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