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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
178
DNA accessibility
11
DNA methylation
Date released
163
June, 2019
9
November, 2018
7
August, 2017
6
July, 2019
4
October, 2019
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
13
fastq
9
bed bedMethyl
9
bigBed bedMethyl
Organism
189
Homo sapiens
Biosample type
189
tissue
41
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
36
musculature of body
28
brain
28
heart
18
ureter
9
pancreas
5
blood vessel
5
liver
5
vasculature
4
artery
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
pericardium
1
spleen
Project
189
AMP
Genome assembly (visualization)
177
GRCh38
170
hg19
Lab
189
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
189 results
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DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
body of pancreas
4
heart left ventricle
3
1
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
skeletal muscle tissue
4
liver
2
1
pancreas
2
1
retina
3
right renal cortex interstitium
3
coronary artery
2
frontal cortex
2
islet of Langerhans
1
1
omental fat pad
2
right atrium auricular region
2
right lobe of liver
2
tibial artery
2
tibial nerve
2
Ammon's horn
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
forelimb muscle
1
globus pallidus
1
heart right ventricle
1
hindlimb muscle
1
inferior parietal cortex
1
left cardiac atrium
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
pericardium
1
pons
1
putamen
1
spleen
1
superior temporal gyrus
1
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