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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
3
DNA accessibility
Date released
41
May, 2022
8
August, 2017
6
February, 2021
4
July, 2019
2
October, 2019
Available data
227
bam
bigWig
209
bed narrowPeak
209
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
41
zippedFastqFolder
29
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
61
Homo sapiens
Biosample type
49
primary cell
12
tissue
Organ
49
epithelium
47
pancreas
5
liver
4
adipose tissue
4
connective tissue
2
heart
2
kidney
1
blood vessel
1
vasculature
Project
47
HPAP
14
AMP
Lab
47
Klaus Kaestner, Upenn
14
AMP-T2D consortium
files.file_type!
bigWig
BIOSAMPLE
ASSAY
61 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
right lobe of liver
1
1
adipose tissue
1
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