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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
217
DNA accessibility
Date released
187
June, 2019
32
March, 2020
17
May, 2021
15
October, 2019
10
November, 2018
6
August, 2017
2
February, 2021
2
July, 2019
1
August, 2018
1
May, 2020
1
November, 2020
Available data
215
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
206
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
31
tsv
15
fastq
3
bedpe bed3+
2
ibed
1
tar
Organism
274
Homo sapiens
Biosample type
207
tissue
49
primary cell
8
cell line
6
in vitro differentiated cells
4
stem cell
Organ
84
kidney
36
limb
35
brain
34
musculature of body
33
heart
20
epithelium
18
ureter
14
connective tissue
13
vasculature
11
blood vessel
11
pancreas
9
liver
8
eye
4
adipose tissue
4
artery
3
vein
2
intestine
2
nerve
2
spleen
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
257
AMP
17
T1D
Genome assembly (visualization)
207
GRCh38
195
hg19
Lab
257
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
BIOSAMPLE
ASSAY
274 results
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Clear Filters
DNase-seq
pCHi-C
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 54 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
CD4-positive, alpha-beta T cell
2
glomerular visceral epithelial cell
2
+ See 33 more…
cell line
HepG2
2
MCF-7
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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