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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1824
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
86
RNA microarray
83
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
212
DNA accessibility
Date released
187
June, 2019
32
March, 2020
17
May, 2021
14
October, 2019
9
November, 2018
5
August, 2017
2
February, 2021
1
August, 2018
1
May, 2020
1
November, 2020
Available data
210
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
31
tsv
13
fastq
3
bedpe bed3+
2
ibed
Organism
269
Homo sapiens
Biosample type
203
tissue
48
primary cell
8
cell line
6
in vitro differentiated cells
4
stem cell
Organ
83
kidney
36
limb
34
brain
34
musculature of body
33
heart
19
epithelium
18
ureter
14
connective tissue
12
vasculature
10
blood vessel
9
liver
9
pancreas
8
eye
4
adipose tissue
4
artery
2
intestine
2
nerve
2
spleen
2
thymus
2
vein
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
252
AMP
17
T1D
Genome assembly (visualization)
207
GRCh38
190
hg19
Lab
252
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
BIOSAMPLE
ASSAY
269 results
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DNase-seq
pCHi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 54 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
CD4-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 33 more…
cell line
HepG2
2
MCF-7
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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