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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
0
shRNA RNA-seq
Assay category
178
DNA accessibility
Date released
163
June, 2019
9
November, 2018
4
October, 2019
2
August, 2017
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
10
fastq
Organism
178
Homo sapiens
Biosample type
178
tissue
31
primary cell
3
cell line
1
in vitro differentiated cells
Organ
68
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
178
AMP
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
178
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
178 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
body of pancreas
4
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
heart left ventricle
3
retina
3
right renal cortex interstitium
3
coronary artery
2
frontal cortex
2
liver
2
omental fat pad
2
pancreas
2
right atrium auricular region
2
right lobe of liver
2
tibial artery
2
tibial nerve
2
Ammon's horn
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
forelimb muscle
1
globus pallidus
1
heart right ventricle
1
hindlimb muscle
1
inferior parietal cortex
1
islet of Langerhans
1
left cardiac atrium
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
pons
1
putamen
1
spleen
1
superior temporal gyrus
1
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