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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
178
DNA accessibility
174
Transcription
Date released
163
June, 2019
106
August, 2021
47
September, 2023
9
April, 2020
9
November, 2018
6
February, 2021
4
October, 2019
3
May, 2023
2
August, 2017
1
December, 2019
1
February, 2023
1
May, 2022
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
103
tsv
13
txt
10
fastq
6
csv
Organism
352
Homo sapiens
Biosample type
352
tissue
218
primary cell
3
in vitro differentiated cells
2
cell line
Organ
132
kidney
120
heart
36
limb
33
musculature of body
27
brain
18
ureter
11
blood vessel
11
vasculature
9
lung
7
pancreas
6
artery
5
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
296
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
285
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
352 results
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DNase-seq
single cell RNA-seq
tissue
kidney
13
64
heart left ventricle
3
18
heart
18
1
left cardiac atrium
1
18
heart right ventricle
1
17
right cardiac atrium
18
muscle of arm
17
brain
14
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
lung
9
aorta
4
aortic valve
4
body of pancreas
4
left renal cortex interstitium
4
left renal pelvis
4
pulmonary valve
4
right renal pelvis
4
tricuspid valve
4
liver
2
1
mitral valve
3
retina
3
right renal cortex interstitium
3
cardiac atrium
2
cardiac ventricle
2
coronary artery
2
frontal cortex
2
interventricular septum
2
omental fat pad
2
pancreas
2
pulmonary artery
2
right atrium auricular region
2
right lobe of liver
2
tibial artery
2
tibial nerve
2
Ammon's horn
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
forelimb muscle
1
globus pallidus
1
hindlimb muscle
1
inferior parietal cortex
1
islet of Langerhans
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
pons
1
putamen
1
skeletal muscle tissue
1
spleen
1
superior temporal gyrus
1
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