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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
153
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
9
DNA accessibility
4
Transcription
Date released
6
June, 2019
2
April, 2018
2
July, 2018
1
August, 2017
1
November, 2018
1
November, 2020
Available data
13
bam
13
bigWig
9
bed broadPeak
9
bed narrowPeak
9
bigBed broadPeak
9
bigBed narrowPeak
8
bed bed3+
5
fastq
4
tsv
Organism
13
Homo sapiens
Biosample type
10
primary cell
2
tissue
1
in vitro differentiated cells
Organ
145
kidney
123
heart
89
epithelium
82
pancreas
36
limb
35
brain
34
musculature of body
18
ureter
17
vasculature
15
blood vessel
13
connective tissue
9
lung
7
liver
6
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
13
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
13 results
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DNase-seq
single cell RNA-seq
primary cell
pancreatic stellate cell
4
cardiac fibroblast
3
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
2
in vitro differentiated cells
adipocyte
1
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