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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
939
ChIP-seq
494
total RNA-seq
267
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
30
pCHi-C
13
Hi-C
10
RRBS
6
DNase-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
189
Transcription
6
DNA accessibility
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
12
February, 2021
3
August, 2017
3
August, 2018
3
July, 2019
3
June, 2018
3
October, 2019
2
December, 2019
1
November, 2018
1
September, 2018
Available data
132
bam
132
bigWig
130
fastq
102
tsv
52
zippedFastqFolder
32
bed narrowPeak
32
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
bed bed3+
2
csv
Organism
195
Homo sapiens
Biosample type
191
primary cell
tissue
3
in vitro differentiated cells
1
cell line
Organ
74
pancreas
73
epithelium
5
connective tissue
3
brain
3
kidney
Project
110
AMP
85
HPAP
Genome assembly (visualization)
104
hg19
102
GRCh38
Lab
110
AMP-T2D consortium
85
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
2
audit script error
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
195 results
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single cell RNA-seq
DNase-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 17 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
cell line
glomerular visceral epithelial cell
1
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