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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
178
DNA accessibility
174
Transcription
Date released
163
June, 2019
106
August, 2021
47
September, 2023
20
March, 2020
9
April, 2020
9
November, 2018
8
October, 2019
6
February, 2021
3
May, 2023
2
August, 2017
1
December, 2019
1
February, 2023
1
May, 2021
1
May, 2022
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
123
tsv
13
txt
10
fastq
6
csv
Organism
377
Homo sapiens
Biosample type
377
tissue
235
primary cell
8
cell line
8
in vitro differentiated cells
4
stem cell
Organ
132
kidney
123
heart
36
limb
34
musculature of body
29
brain
18
ureter
12
blood vessel
12
vasculature
10
lung
8
pancreas
7
eye
6
artery
6
liver
3
adipose tissue
3
connective tissue
2
intestine
2
nerve
2
spleen
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
320
AMP
47
KPMP
9
LungMap
1
T1D
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
309
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
5
audit script error
3
inconsistent ontology term
BIOSAMPLE
ASSAY
377 results
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DNase-seq
single cell RNA-seq
pCHi-C
tissue
kidney
13
64
heart left ventricle
3
18
1
heart
18
1
heart right ventricle
1
17
1
left cardiac atrium
1
18
right cardiac atrium
18
1
muscle of arm
17
brain
14
muscle of leg
13
renal cortex interstitium
11
lung
9
1
renal pelvis
10
right kidney
10
left kidney
9
aorta
4
1
islet of Langerhans
1
4
aortic valve
4
body of pancreas
4
left renal cortex interstitium
4
left renal pelvis
4
liver
2
1
1
pulmonary valve
4
right renal pelvis
4
tricuspid valve
4
mitral valve
3
pancreas
2
1
retina
3
right renal cortex interstitium
3
Ammon's horn
1
1
cardiac atrium
2
cardiac ventricle
2
coronary artery
2
frontal cortex
2
interventricular septum
2
omental fat pad
2
pulmonary artery
2
right atrium auricular region
2
right lobe of liver
2
spleen
1
1
thymus
2
tibial artery
2
tibial nerve
2
adipose tissue
1
adrenal gland
1
ascending aorta
1
bladder (urinary bladder)
1
caudate nucleus
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
dorsolateral prefrontal cortex
1
esophagus
1
forelimb muscle
1
gastric (mucosa of stomach)
1
globus pallidus
1
hindlimb muscle
1
inferior parietal cortex
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
ovary
1
pons
1
psoas muscle
1
putamen
1
sigmoid colon
1
skeletal muscle tissue
1
small intestine
1
superior temporal gyrus
1
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