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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
529
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
0
single cell RNA-seq
Assay category
161
DNA accessibility
Date released
147
June, 2019
9
November, 2018
4
October, 2019
1
August, 2017
Available data
161
bam
161
bed narrowPeak
161
bigBed narrowPeak
161
bigWig
160
bed bed3+
160
bed broadPeak
160
bigBed broadPeak
10
fastq
Organism
161
Homo sapiens
Biosample type
161
tissue
122
primary cell
2
cell line
1
in vitro differentiated cells
Organ
67
kidney
36
limb
32
musculature of body
25
heart
18
ureter
17
brain
5
blood vessel
5
pancreas
5
vasculature
4
artery
3
eye
3
liver
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
161
AMP
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
161
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
161 results
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DNase-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
8
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
heart left ventricle
3
retina
3
right renal cortex interstitium
3
body of pancreas
2
coronary artery
2
frontal cortex
2
liver
2
omental fat pad
2
pancreas
2
right atrium auricular region
2
tibial artery
2
tibial nerve
2
ascending aorta
1
cerebellum (Hemisphere)
1
forelimb muscle
1
heart right ventricle
1
hindlimb muscle
1
islet of Langerhans
1
left cardiac atrium
1
occipital lobe
1
right lobe of liver
1
spleen
1
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