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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1037
Transcription
178
DNA accessibility
Date released
444
February, 2021
163
June, 2019
143
May, 2020
120
July, 2018
91
August, 2017
50
August, 2021
39
May, 2021
31
July, 2019
26
May, 2022
26
October, 2019
25
February, 2020
19
November, 2019
13
February, 2023
9
March, 2020
9
November, 2018
6
April, 2018
1
May, 2023
Available data
1084
bam
1078
bigWig
931
tsv
177
bed narrowPeak
177
bigBed narrowPeak
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
113
fastq
59
txt
Organism
1215
Homo sapiens
Biosample type
1215
tissue
278
primary cell
137
in vitro differentiated cells
115
cell line
Organ
457
connective tissue
399
adipose tissue
296
pancreas
174
liver
118
kidney
62
bone element
44
brain
43
limb
42
heart
37
musculature of body
22
eye
18
ureter
12
blood vessel
12
vasculature
7
nerve
6
artery
4
skeleton
2
epithelium
1
spinal cord
1
spleen
Project
1208
AMP
7
T1D
Genome assembly (visualization)
1079
GRCh38
1063
hg19
Lab
1133
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
1215 results
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Clear Filters
total RNA-seq
DNase-seq
tissue
adipose tissue
382
islet of Langerhans
298
1
liver
167
2
kidney
49
13
bone tissue
58
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