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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
296
DNA accessibility
Date released
64
August, 2021
58
February, 2023
55
May, 2020
39
May, 2022
23
June, 2019
16
May, 2021
15
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
39
zippedFastqFolder
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
fastq
12
tsv
Organism
296
Homo sapiens
Biosample type
155
tissue
125
primary cell
16
cell line
Organ
84
kidney
83
pancreas
73
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
236
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
hg19
441
GRCh38
Lab
159
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
296 results
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Clear Filters
ATAC-seq
DNase-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
26
body of pancreas
2
heart
2
+ See 15 more…
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
+ See 10 more…
cell line
EndoC_BH1
16
See all biosamples
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