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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1413
total RNA-seq
1321
ChIP-seq
494
ATAC-seq
363
single cell RNA-seq
174
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
51
pCHi-C
26
Hi-C
21
RRBS
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
174
DNA accessibility
Date released
155
June, 2019
9
November, 2018
5
August, 2017
4
October, 2019
1
November, 2020
Available data
171
bam
171
bed narrowPeak
171
bigBed narrowPeak
171
bigWig
169
bed broadPeak
169
bigBed broadPeak
167
bed bed3+
12
fastq
Organism
174
Homo sapiens
Biosample type
142
tissue
31
primary cell
cell line
1
in vitro differentiated cells
Organ
80
kidney
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
174
AMP
Genome assembly (visualization)
169
GRCh38
148
hg19
Lab
174
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
cell line
assay_title!
small RNA-seq
organ_slims!
limb
BIOSAMPLE
ASSAY
174 results
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DNase-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 34 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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