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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1420
total RNA-seq
1316
ChIP-seq
502
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
23
DNase-seq
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
23
DNA accessibility
Date released
June, 2019
9
November, 2018
8
October, 2019
5
August, 2017
1
November, 2020
Available data
20
bam
20
bed narrowPeak
20
bigBed narrowPeak
20
bigWig
18
bed broadPeak
18
bigBed broadPeak
16
bed bed3+
12
fastq
Organism
23
Homo sapiens
Biosample type
15
tissue
7
primary cell
cell line
1
in vitro differentiated cells
Organ
4
blood vessel
4
epithelium
4
limb
4
liver
4
vasculature
3
connective tissue
3
pancreas
2
artery
2
brain
2
kidney
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
23
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
23
AMP-T2D consortium
biosample_type!
cell line
month_released!
June, 2019
BIOSAMPLE
ASSAY
23 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial artery
2
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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