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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
295
DNA accessibility
Date released
187
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
10
October, 2019
9
November, 2018
6
August, 2021
4
August, 2017
2
February, 2023
1
August, 2022
1
November, 2020
Available data
208
bam
208
bed narrowPeak
208
bigBed narrowPeak
208
bigWig
205
bed bed3+
205
bed broadPeak
205
bigBed broadPeak
38
fastq
21
zippedFastqFolder
1
txt
Organism
294
Homo sapiens
Biosample type
206
tissue
87
primary cell
2
cell line
in vitro differentiated cells
Organ
87
kidney
36
limb
34
musculature of body
32
brain
30
heart
19
epithelium
19
pancreas
18
ureter
11
vasculature
10
lung
9
blood vessel
8
blood
8
bodily fluid
8
connective tissue
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
219
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
206
GRCh38
186
hg19
Lab
213
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
295 results
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Clear Filters
DNase-seq
snATAC-seq
tissue
kidney
13
6
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
+ See 20 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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