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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
1149
ChIP-seq
460
ATAC-seq
361
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
46
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
209
DNA accessibility
Date released
187
June, 2019
9
November, 2018
8
October, 2019
4
August, 2017
1
November, 2020
Available data
206
bam
206
bed narrowPeak
206
bigBed narrowPeak
206
bigWig
204
bed broadPeak
204
bigBed broadPeak
203
bed bed3+
11
fastq
Organism
209
Homo sapiens
Biosample type
178
tissue
31
primary cell
cell line
in vitro differentiated cells
Organ
80
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
209
AMP
Genome assembly (visualization)
204
GRCh38
183
hg19
Lab
209
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
cell line
BIOSAMPLE
ASSAY
209 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
See all biosamples
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