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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1526
ChIP-seq
1268
total RNA-seq
386
ATAC-seq
291
single cell RNA-seq
192
DNase-seq
86
RNA microarray
84
snATAC-seq
52
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
192
DNA accessibility
Date released
173
June, 2019
9
November, 2018
5
October, 2019
4
August, 2017
1
November, 2020
Available data
191
bam
191
bed narrowPeak
191
bigBed narrowPeak
191
bigWig
189
bed broadPeak
189
bigBed broadPeak
188
bed bed3+
11
fastq
Organism
192
Homo sapiens
Biosample type
178
tissue
13
primary cell
1
cell line
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
192
AMP
Genome assembly (visualization)
189
GRCh38
174
hg19
Lab
192
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
BIOSAMPLE
ASSAY
192 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
Panc1
1
See all biosamples
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