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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
935
ChIP-seq
442
total RNA-seq
263
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
32
pCHi-C
28
DNase-seq
14
Hi-C
9
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA accessibility
Date released
20
June, 2019
4
October, 2019
3
August, 2017
1
November, 2020
Available data
26
bam
26
bed narrowPeak
26
bigBed narrowPeak
26
bigWig
24
bed broadPeak
24
bigBed broadPeak
22
bed bed3+
2
fastq
Organism
28
Homo sapiens
Biosample type
tissue
25
primary cell
2
cell line
1
in vitro differentiated cells
Organ
19
epithelium
13
kidney
7
connective tissue
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
28
AMP
Genome assembly (visualization)
24
GRCh38
20
hg19
Lab
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
organ_slims!
vasculature
BIOSAMPLE
ASSAY
28 results
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DNase-seq
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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