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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1342
total RNA-seq
1232
ChIP-seq
504
ATAC-seq
362
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
70
WGBS
53
pCHi-C
26
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
7
DNase-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
7
DNA accessibility
Date released
4
August, 2017
3
October, 2019
Available data
204
bam
204
bed narrowPeak
204
bigBed narrowPeak
204
bigWig
201
bed broadPeak
201
bigBed broadPeak
bed bed3+
9
fastq
Organism
7
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
3
epithelium
3
kidney
1
connective tissue
liver
1
pancreas
Project
7
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
7
AMP-T2D consortium
files.file_type!
bed bed3+
organ_slims!
liver
BIOSAMPLE
ASSAY
7 results
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DNase-seq
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
tissue
islet of Langerhans
1
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