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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
17
DNA methylation
Date released
187
June, 2019
15
July, 2019
10
October, 2019
4
August, 2017
1
November, 2020
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
fastq
Organism
217
Homo sapiens
Biosample type
176
tissue
39
primary cell
2
cell line
Organ
85
kidney
36
limb
36
musculature of body
32
brain
32
heart
25
epithelium
18
ureter
12
vasculature
9
blood vessel
8
connective tissue
7
pancreas
5
eye
4
artery
4
liver
2
nerve
2
vein
1
adipose tissue
1
pericardium
Project
217
AMP
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
217
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
217 results
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Clear Filters
DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
kidney
13
1
brain
12
1
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
1
kidney tubule cell
3
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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