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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1182
total RNA-seq
910
ChIP-seq
441
ATAC-seq
235
single cell RNA-seq
198
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
50
pCHi-C
30
Hi-C
18
small RNA-seq
17
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
198
DNA accessibility
Date released
187
June, 2019
8
October, 2019
2
August, 2017
1
November, 2020
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
205
bed broadPeak
205
bigBed broadPeak
203
bed bed3+
fastq
Organism
198
Homo sapiens
Biosample type
168
tissue
30
primary cell
cell line
Organ
80
kidney
36
limb
33
musculature of body
30
brain
30
heart
18
epithelium
18
ureter
11
vasculature
9
blood vessel
7
connective tissue
4
artery
4
eye
4
pancreas
3
liver
2
nerve
2
vein
1
adipose tissue
Project
198
AMP
Genome assembly (visualization)
194
GRCh38
172
hg19
Lab
198
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
biosample_type!
cell line
BIOSAMPLE
ASSAY
198 results
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DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
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