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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
946
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
DNase-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
3
October, 2019
2
August, 2017
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
fastq
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
tissue
Organ
3
epithelium
3
kidney
1
liver
Project
5
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
files.file_type!
fastq
bed broadPeak
BIOSAMPLE
ASSAY
5 results
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DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
cell line
glomerular visceral epithelial cell
1
tissue
right lobe of liver
1
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