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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1515
ChIP-seq
1444
total RNA-seq
525
ATAC-seq
363
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
64
WGBS
56
pCHi-C
34
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
206
DNA accessibility
Date released
187
June, 2019
10
October, 2019
8
November, 2018
August, 2017
1
November, 2020
Available data
204
bam
204
bed narrowPeak
204
bigBed narrowPeak
204
bigWig
203
bed bed3+
203
bed broadPeak
203
bigBed broadPeak
8
fastq
Organism
206
Homo sapiens
Biosample type
175
tissue
29
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
spleen
Project
206
AMP
Genome assembly (visualization)
204
GRCh38
181
hg19
Lab
206
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
organ_slims!
spleen
BIOSAMPLE
ASSAY
206 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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