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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1560
ChIP-seq
999
total RNA-seq
483
ATAC-seq
361
single cell RNA-seq
209
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
209
DNA accessibility
Date released
186
June, 2019
10
October, 2019
8
November, 2018
4
August, 2017
1
November, 2020
Available data
206
bam
206
bed narrowPeak
206
bigBed narrowPeak
206
bigWig
203
bed broadPeak
203
bigBed broadPeak
202
bed bed3+
10
fastq
Organism
209
Homo sapiens
Biosample type
176
tissue
31
primary cell
2
cell line
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
adipose tissue
2
nerve
2
vein
1
spleen
Project
209
AMP
Genome assembly (visualization)
204
GRCh38
183
hg19
Lab
209
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
adipose tissue
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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