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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1516
ChIP-seq
1105
total RNA-seq
504
ATAC-seq
363
single cell RNA-seq
200
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
51
pCHi-C
29
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
Date released
186
June, 2019
October, 2019
8
November, 2018
5
August, 2017
1
November, 2020
Available data
199
bam
199
bed narrowPeak
199
bigBed narrowPeak
199
bigWig
197
bed broadPeak
197
bigBed broadPeak
195
bed bed3+
11
fastq
Organism
200
Homo sapiens
Biosample type
172
tissue
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
7
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
adipose tissue
2
artery
1
spleen
Project
200
AMP
Genome assembly (visualization)
197
GRCh38
176
hg19
Lab
200
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
adipose tissue
month_released!
October, 2019
BIOSAMPLE
ASSAY
200 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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