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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
882
ChIP-seq
831
total RNA-seq
420
ATAC-seq
229
single cell RNA-seq
190
DNase-seq
86
RNA microarray
57
snATAC-seq
54
pCHi-C
53
WGBS
28
Hi-C
17
RRBS
15
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
190
DNA accessibility
Date released
181
June, 2019
6
October, 2019
2
August, 2017
1
November, 2020
Available data
198
bam
198
bed narrowPeak
198
bigBed narrowPeak
198
bigWig
195
bed broadPeak
195
bigBed broadPeak
193
bed bed3+
fastq
Organism
190
Homo sapiens
Biosample type
162
tissue
26
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
11
vasculature
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
adipose tissue
Project
190
AMP
Genome assembly (visualization)
186
GRCh38
165
hg19
Lab
190
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
adipose tissue
blood vessel
files.file_type!
fastq
BIOSAMPLE
ASSAY
190 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 33 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
astrocyte of the cerebellum
1
+ See 15 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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