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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1779
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
299
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
131
DNA accessibility
75
DNA methylation
Date released
109
June, 2019
41
May, 2022
16
November, 2018
14
August, 2017
12
July, 2019
7
October, 2019
6
February, 2021
1
November, 2020
Available data
148
bam
147
bigWig
130
bed narrowPeak
130
bigBed narrowPeak
128
bed broadPeak
128
bigBed broadPeak
126
bed bed3+
41
zippedFastqFolder
29
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
206
Homo sapiens
Biosample type
137
tissue
66
primary cell
2
cell line
1
in vitro differentiated cells
Organ
kidney
66
epithelium
59
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
159
AMP
47
HPAP
Genome assembly (visualization)
145
GRCh38
114
hg19
Lab
159
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
206 results
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Clear Filters
DNase-seq
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
heart left ventricle
3
4
+ See 35 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
+ See 12 more…
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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