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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1561
ChIP-seq
1456
total RNA-seq
452
ATAC-seq
296
single cell RNA-seq
99
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
53
pCHi-C
30
Hi-C
15
RRBS
13
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
99
DNA accessibility
Date released
79
June, 2019
7
November, 2018
7
October, 2019
5
August, 2017
1
November, 2020
Available data
98
bam
98
bed narrowPeak
98
bigBed narrowPeak
98
bigWig
96
bed broadPeak
96
bigBed broadPeak
94
bed bed3+
10
fastq
Organism
99
Homo sapiens
Biosample type
83
tissue
14
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
99
AMP
Genome assembly (visualization)
96
GRCh38
92
hg19
Lab
99
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
brain
BIOSAMPLE
ASSAY
99 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
muscle of leg
13
body of pancreas
4
heart left ventricle
3
+ See 18 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
cardiac muscle cell
1
hepatic stellate cell
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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