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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1414
total RNA-seq
1308
ChIP-seq
501
ATAC-seq
362
single cell RNA-seq
177
DNase-seq
87
RNA microarray
83
snATAC-seq
73
WGBS
50
pCHi-C
24
Hi-C
16
RRBS
16
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
177
DNA accessibility
Date released
154
June, 2019
9
November, 2018
8
October, 2019
5
August, 2017
1
November, 2020
Available data
174
bam
174
bed narrowPeak
174
bigBed narrowPeak
174
bigWig
172
bed broadPeak
172
bigBed broadPeak
170
bed bed3+
12
fastq
Organism
177
Homo sapiens
Biosample type
146
tissue
30
primary cell
cell line
1
in vitro differentiated cells
Organ
80
kidney
36
limb
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
177
AMP
Genome assembly (visualization)
172
GRCh38
151
hg19
Lab
177
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
musculature of body
biosample_type!
cell line
BIOSAMPLE
ASSAY
177 results
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DNase-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 36 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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