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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1777
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
32
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
6
DNA accessibility
Date released
3
August, 2017
3
February, 2021
3
October, 2019
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
204
bed broadPeak
bigBed broadPeak
202
bed bed3+
12
fastq
3
tsv
Organism
9
Homo sapiens
Biosample type
5
tissue
3
primary cell
1
cell line
Organ
6
kidney
3
epithelium
1
liver
1
pancreas
Project
9
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
9
AMP-T2D consortium
organ_slims!
vein
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
9 results
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Clear Filters
DNase-seq
snDrop-seq
tissue
islet of Langerhans
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
right lobe of liver
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
cell line
glomerular visceral epithelial cell
1
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