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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1596
ChIP-seq
1516
total RNA-seq
527
ATAC-seq
360
single cell RNA-seq
178
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
29
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
178
DNA accessibility
Date released
157
June, 2019
8
October, 2019
7
November, 2018
5
August, 2017
1
November, 2020
Available data
175
bam
175
bed narrowPeak
175
bigBed narrowPeak
175
bigWig
172
bed broadPeak
172
bigBed broadPeak
170
bed bed3+
10
fastq
Organism
178
Homo sapiens
Biosample type
151
tissue
24
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
178
AMP
Genome assembly (visualization)
173
GRCh38
162
hg19
Lab
178
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
vein
brain
BIOSAMPLE
ASSAY
178 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 27 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 12 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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