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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1713
ChIP-seq
1461
total RNA-seq
484
ATAC-seq
270
single cell RNA-seq
180
DNase-seq
86
RNA microarray
83
snATAC-seq
67
WGBS
54
pCHi-C
29
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
180
DNA accessibility
Date released
157
June, 2019
9
November, 2018
8
October, 2019
5
August, 2017
1
November, 2020
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
174
bed broadPeak
174
bigBed broadPeak
172
bed bed3+
12
fastq
Organism
180
Homo sapiens
Biosample type
151
tissue
26
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
180
AMP
Genome assembly (visualization)
175
GRCh38
157
hg19
Lab
180
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
vein
heart
BIOSAMPLE
ASSAY
180 results
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Clear Filters
DNase-seq
tissue
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 34 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 16 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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