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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1528
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
208
DNase-seq
86
RNA microarray
83
snATAC-seq
75
WGBS
57
pCHi-C
32
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
208
DNA accessibility
Date released
187
June, 2019
9
November, 2018
6
October, 2019
5
August, 2017
1
November, 2020
Available data
205
bam
205
bed narrowPeak
205
bigBed narrowPeak
205
bigWig
202
bed broadPeak
202
bigBed broadPeak
200
bed bed3+
12
fastq
Organism
208
Homo sapiens
Biosample type
176
tissue
29
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
nerve
vein
1
spleen
Project
208
AMP
Genome assembly (visualization)
203
GRCh38
182
hg19
Lab
208
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
vein
nerve
BIOSAMPLE
ASSAY
208 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 17 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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