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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
804
ChIP-seq
648
total RNA-seq
220
ATAC-seq
77
single cell RNA-seq
56
WGBS
18
DNase-seq
13
Hi-C
11
snATAC-seq
10
MeRIP-seq
5
small RNA-seq
4
RRBS
4
pCHi-C
2
Capture-C
2
FAIRE-seq
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
whole genome sequencing assay
Assay category
18
DNA accessibility
Date released
8
June, 2019
5
November, 2018
3
October, 2019
2
August, 2017
Available data
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
17
bigWig
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
fastq
Organism
18
Homo sapiens
Biosample type
15
tissue
2
primary cell
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
18
AMP
Genome assembly (visualization)
17
GRCh38
15
hg19
Lab
18
AMP-T2D consortium
BIOSAMPLE
ASSAY
18 results
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DNase-seq
tissue
body of pancreas
4
coronary artery
2
liver
2
pancreas
2
right lobe of liver
2
+ See 2 more…
primary cell
hepatic stellate cell
1
hepatocyte
1
cell line
Panc1
1
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